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問題一覧
1
What is chromatin
DNA wrapped around proteins to form a thread-like structure when cell not divide
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What are chromosomes
When cell about to divide, the chromatin coils tighten
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What is DNA
Is a double-stranded molecule, sides are made of sugar phosphate backbone with base pairs determining genetic information
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The organization of genes on a human chromosome
Chromosomes are made up of DNA, which has genes. Genes are instructions to make proteins
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Chromosome Duplication and separation
Cell division is a process where cell divides into 2 daughter cells,each with full genetic information
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DNA replication origin
Making copys of DNA
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centromere
region of chromosome that holds together sister chromatids
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Telomeres
are protective caps at the ends of chromosomes. They shorten with each cell division, contributing to aging
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The three DNA element required to produce a chromosome
Telomeres, replication origins, and centromere
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Telomere
Protects chromosome
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Replication origins
Ensures each chromosomes is copied
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Centromere
Separates chromatids during division
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a-satellite DNA in Centromere
forming higher-order arrays.CENP-B box aids kinetochore assembly needed for division
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Kinetochore
bridge connects chromosome to spindle fibers,ensuring that chromosomes are properly separated during division (inner connect chromosome , outer connect spindle fibers )
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Telomere
Telomerase adds DNA repeats to chromosome ends, maintaining stability and preventing aging.
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DNA replication
like unzipping a zipper to connect to new strands to create identical copies for new cells.
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Histones
are proteins that package DNA into nucleosomes
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Nucleosome
basic structural unit of DNA packaging in eukaryotes
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Nucleosome
DNA wraps around histone proteins to form nucleosomes, which are compacted with non-histone proteins into chromatin, compacting DNA to fit in nucleus
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Structure of Nucleosome
• nucleosome core has 8 histone proteins • linker DNA that separates nucleosome core length's can be from a few nucleotide pairs to 80. • double-stranded DNA is 147 nucleotide pairs long • protein core made of eight histone molecules
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Core histone
histone octamer is wrapped around each other to form core.DNA then wrapped around core,forming nucleosome.N-terminal tails of histones stick out from nucleosome and impacting how tightly DNA packaging
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Histone code
how tightly DNA is packaged and how genes are expressed.
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Histone modification
alters DNA structure. Acetylation loosens, methylation tightens DNA thread.
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Chromatin in Nucleus
One DNA laid end to end, they would reach 2 meters
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Chromatin packing
process of organizing DNA into compact structures to fit within nucleus
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Higher-Order Structure of Mitotic Chromosome
During mitosis,DNA is tightly packed into chromosomes to ensure accurate passing to daughter cells
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Higher-Order Structure of Mitotic Chromosome
Scientists use fluorescent probes binding to DNA to visualize chromosome structure,used to study regions of it
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interphase chromatin
DNA loops and domains compact effectively, controlling gene expression, preserving genome structure
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gene expression level associated with intranuclear location
Genes closer to the centre are less active and vise versa
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Nuclear Envelope
double membrane that surrounds the nucleus of a cell. It protects the cell's DNA and controls the movement of molecules in and out of the nucleus.
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Nuclear pore
Gate that allows molecules to go into nucleus
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Nuclear localization signal
Indicate proteins to enter nucleus
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importins
proteins that bind to NLS on cargo proteins. going to nuclear pore to drop it then repeating the process
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Ran-GDP
Less active form, found in the cytoplasm.
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Ran-GTP
More active form, found in the nucleus.
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Ran-GEF
protein that converts Ran-GDP to Ran-GTP in the nucleus
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Ran-GAP
converts Ran-GTP to Ran-GDP in the cytoplasm
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Ran-GTP
binds to importins to release cargo protein
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Directional nuclear transport (Import)
Importin binds to cargo with NLS and Ran-GTP.enters nucleus. Inside, Ran-GTP is broken to Ran-GDP, releasing the cargo.
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Directional nuclear transport (Export)
Exportin binds to cargo with NES and Ran-GTP.exits nucleus. Outside, Ran-GTP is broken to Ran-GDP, releasing the cargo.
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NF-AT
protein that controls gene expression.
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Signaling transduction
NF-AT is normally inactive in the cytoplasm. When calcium levels rise, calcineurin removes phosphate groups from NF-AT, exposing a nuclear import signal. NF-AT then enters the nucleus and activates gene transcription by binding to DNA.
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SREBP
Regulates cholesterol levels
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Signaling transduction
High cholesterol: SREBP is inactive, no cholesterol creation. Low cholesterol: SCAP senses low cholesterol, SCAP senses low cholesterol, activates SREBP. SREBP enters nucleus, activates cholesterol creates genes.
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The breakdown and reformation of the nuclear envelope
* Lamins are phosphorylated. * Nuclear envelope breaks down. * Lamins are dephosphorylated. * Nuclear envelope reforms.
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Nuclear lamina: intermediate filament
protein network that supports nuclear envelope.helps maintain nuclear shape and organizes chromatin.
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Lamin organization
Lamins are rod-shaped proteins having tail domain and globular head that form dimers. These dimers assemble into nuclear lamina
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Lamin interaction with inner nuclear membrane
Interact with membrane proteins like LBR, LAP2, Man-1, Emerin, and LAP1 to anchor nuclear lamina to inner nuclear membrane.
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Lamin interaction with inner nuclear membrane
Mutations in lamin A gene can cause various genetic disorders like muscular dystrophies,skeletal abnormalities,accelerated aging,nerve disorders.
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Major subnuclear structure
nucleus contains many subnuclear structures,like nucleoli for ribosome production,speckles for RNA processing,PML bodies for gene regulation,Cajal bodies for RNA modification.
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Nucleolus
is the site of ribosome biogenesis.
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Nucleolus FC
rDNA transcription
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Nucleolus DFC
rRNA processing
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Nucleolus GC
ribosome assembly
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Dynamics of Chromosome and Nucleolar component
FRAP experiments show that chromatin is relatively static, while nucleolar components are highly dynamic.
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Nuclear matrix
a protein network that organizes chromosomes and other nuclear components.